Phylogenetics
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Murka v.1.3.1b
Murka (pronounced M-oo-rka, 'she-cat' in Russian) is a free program for inferring parsimonious phylogenies (i.e. trees of the minimal cost) from alignments of biological sequences.
IQPNNI - Important Quartet Puzzling and NNI Operation v.3.3.2
Important Quartet Puzzling and NNI Operation. An efficient tree reconstruction method (IQPNNI) is introduced to reconstruct a phylogenetic tree based on DNA or amino acid sequence data.
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TreeSnatcher Plus v.June 2010
A Phylogenetic Tree Capturing Tool. TreeSnatcher Plus is a GUI-driven Java software that automates the generation of a machine- readable representation of multifurcating phylogenetic trees contained in pixel images.
Bosque v.1.7.157
Typical phylogenetic analysis made easy. Bosque help you manage the computational resources involved in typical phylogenetic analyses. Bosque has been implemented as a client-server software where the server can execute installed phylogenetic
SISSI: Simulating Sequence Evolution with Site-Specific Interactions v.1.0
Simulating Sequence Evolution with Site-Specific Interactions. SISSI is a utility tool to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices.
TripleC (Triple Consensus) v.1.0
TripleC (Triple Consensus) is a software to construct consensus trees from rooted triples.Usage java -jar Triplec.jar NoReps InFile.newickHere NoReps is the number of triple reconstructions to use for the consensus. This is required because
CodonCode Aligner Sequence Assembler v.3.7.1
CodonCode Aligner is user-friendly software for DNA sequence assembly, alignment, contig editing, and mutation detection.